SNP Profiles of JA 62 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CC	CT	CT	CT	GT	CT	CC	TT	AA	CC	AA	TT
1._JA_6_/2_[POU]	CC	GG	CC	CT	CT	CT	GT	CT	CC	TT	AA	CC	AA	TT
2._JA_6_/2_[POU]	CC	GG	CC	CT	CT	CT	GT	CT	CC	TT	AA	CC	AA	TT
3._JA_6_/2_[POU]	CC	GG	CC	CT	CT	CT	GT	CT	CC	TT	AA	CC	AA	TT
4._JA_6_/2_[POU]	CC	GG	CC	CT	CT	CT	GT	CT	CC	TT	AA	CC	AA	TT
5._JA_6_/2_[POU]	CC	GG	CC	CT	CT	CT	GT	CT	CC	TT	AA	CC	AA	TT
6._JA_6_/2_[POU]	CC	GG	CC	CT	CT	CT	GT	CT	CC	TT	AA	CC	AA	TT
7._JA_6_/2_[POU]	CC	GG	CC	CT	CT	CT	GT	CT	CC	TT	AA	CC	AA	TT
8._JA_6_/2_[POU]	CC	GG	CC	CT	CT	CT	GT	CT	CC	TT	AA	CC	AA	TT
9._JA_6_/2_[POU]	CC	GG	CC	CT	CT	CT	GT	CT	CC	TT	AA	CC	AA	TT
10._GC-08-091-2-14	CC	GG	CC	CT	CT	CT	GT	CT	CC	TT	AA	CC	AA	TT
11._GC-08-091-2-14	CC	GG	CC	CT	CT	CT	GT	CT	CC	TT	AA	CC	AA	TT
12._JA_6_/2_[POU]	CC	GG	CC	CT	CT	CT	GT	CT	CC	TT	AA	CC	AA	TT
13._JA_6_/2_[POU]	CC	GG	CC	CT	CT	CT	GT	CT	CC	_	AA	CC	AA	TT
14._JA_6_/2_[POU]	CC	GG	CC	CT	CT	CT	GT	CT	CC	AT	AA	CC	AA	TT
15._JA_6_/2_[POU]	CT	AG	CG	CT	CT	CT	GT	CT	CT	AT	AG	CC	AG	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA	AG
1._JA_6_/2_[POU]	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA	AG
2._JA_6_/2_[POU]	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA	AG
3._JA_6_/2_[POU]	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA	AG
4._JA_6_/2_[POU]	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA	AG
5._JA_6_/2_[POU]	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA	AG
6._JA_6_/2_[POU]	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA	AG
7._JA_6_/2_[POU]	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA	AG
8._JA_6_/2_[POU]	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA	AG
9._JA_6_/2_[POU]	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA	AG
10._GC-08-091-2-14	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA	AG
11._GC-08-091-2-14	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA	AG
12._JA_6_/2_[POU]	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA	AG
13._JA_6_/2_[POU]	AT	GG	CT	CT	GG	_	AA	CT	CC	CC	GG	CC	AA	AG
14._JA_6_/2_[POU]	AT	GG	CT	CT	GG	GG	AG	CT	CC	CC	GG	CC	AA	AG
15._JA_6_/2_[POU]	AT	GG	CT	CT	GG	GG	AA	TT	CC	CG	GT	CT	AC	AG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X
1._JA_6_/2_[POU]	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X
2._JA_6_/2_[POU]	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X
3._JA_6_/2_[POU]	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X
4._JA_6_/2_[POU]	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X
5._JA_6_/2_[POU]	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X
6._JA_6_/2_[POU]	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X
7._JA_6_/2_[POU]	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X
8._JA_6_/2_[POU]	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X
9._JA_6_/2_[POU]	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X
10._GC-08-091-2-14	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X
11._GC-08-091-2-14	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X
12._JA_6_/2_[POU]	AG	AT	CC	AA	CC	AC	_	GT	CC	AT	CG	X_X	X_X	X_X
13._JA_6_/2_[POU]	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X
14._JA_6_/2_[POU]	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X
15._JA_6_/2_[POU]	GG	AT	CC	AA	CG	CC	CT	GT	CC	AT	CG	X_X	X_X	X_X

Input profile: JA_6_/2_[POU]

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Mars Center for Cocoa Science, Brazil

Location: 8214 2 > FP

Dapeng Zhang, 2016

1._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 3 > FP

Dapeng Zhang, 2016

2._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 1 > FP

Dapeng Zhang, 2016

3._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 13

Dapeng Zhang, 2016

4._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 11

Dapeng Zhang, 2016

5._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 9

Dapeng Zhang, 2016

6._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 7

Dapeng Zhang, 2016

7._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 5

Dapeng Zhang, 2016

8._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 4

Dapeng Zhang, 2016

Population Assignment:

View Data

Dapeng Zhang, 2016

9._JA_6_/2_[POU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 4

Dapeng Zhang, 2016

Population Assignment:

View Data

Dapeng Zhang, 2016

10._JA_6_/2_[POU] GC-08-091-2-14

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Mars, 2018

11._JA_6_/2_[POU] GC-08-091-2-14

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

Mars, 2018

12._JA_6_/2_[POU]

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 10

Dapeng Zhang, 2016

13._JA_6_/2_[POU]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 15

Dapeng Zhang, 2016

14._JA_6_/2_[POU]

97.4 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 364

Dapeng Zhang, 2016

15._JA_6_/2_[POU]

80.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 12

Dapeng Zhang, 2016

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25

SNP Profiles of JA 62 View Data

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Input profile: JA_6_/2_[POU]

1._JA_6_/2_[POU]

identical 39 shared markers

2._JA_6_/2_[POU]

identical 39 shared markers

3._JA_6_/2_[POU]

identical 39 shared markers

4._JA_6_/2_[POU]

identical 39 shared markers

5._JA_6_/2_[POU]

identical 39 shared markers

6._JA_6_/2_[POU]

identical 39 shared markers

7._JA_6_/2_[POU]

identical 39 shared markers

8._JA_6_/2_[POU]

identical 39 shared markers

9._JA_6_/2_[POU]

identical 39 shared markers

10._JA_6_/2_[POU] GC-08-091-2-14

identical 39 shared markers

11._JA_6_/2_[POU] GC-08-091-2-14

identical 39 shared markers

12._JA_6_/2_[POU]

identical 38 shared markers

13._JA_6_/2_[POU]

identical 37 shared markers

14._JA_6_/2_[POU]

97.4 % 39 shared markers

15._JA_6_/2_[POU]

80.8 % 39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
39 shared markers

identical
38 shared markers

identical
37 shared markers

97.4 %
39 shared markers

80.8 %
39 shared markers